Plot napping object from format_data_PPBstats.data_organo_napping

Source: R/plot.data_organo_napping.R

plot.data_napping gets ggplot to describe the data

# S3 method for data_organo_napping
plot(x, plot_type = "boxplot",
  x_axis = NULL, in_col = NULL, vec_variables = NULL,
  nb_parameters_per_plot_x_axis = 5, nb_parameters_per_plot_in_col = 5,
  labels_on = NULL, labels_size = 4, pie_size = 0.2, zoom = 6, ...)

Arguments

x

The data frame coming from format_data_PPBstats.data_organo_napping
plot_type

the type of plot you wish. It can be :

  • "pam" for presence abscence matrix that represent the combinaison of germplasm x location

  • "histogramm"

  • "barplot", where sd error are displayed

  • "boxplot"

  • "interaction"

  • "biplot"

  • "radar"

  • "raster"

  • "map"
x_axis

factor displayed on the x.axis of a plot. "date_julian" can be choosen: it will display julian day for a given variable automatically calculated from format_data_PPBstats(). This is possible only for plot_type = "histogramm", "barplot", "boxplot" and "interaction".
in_col

factor displayed in color of a plot
vec_variables

vector of variables to display
nb_parameters_per_plot_x_axis

the number of parameters per plot on x_axis arguments
nb_parameters_per_plot_in_col

the number of parameters per plot for in_col arguments
labels_on

factor to display for plot_type = "biplot"
labels_size

size of the label for plot_type = "biplot" and "radar"
pie_size

when plot_type = "map" and vec_variables is not NULL, size of the pie
zoom

zoom of the map, see ?get_map for more details
...

further arguments passed to or from other methods

Value

  • For plot_type "histogramm", "barplot", "boxplot" or "interaction", the function returns a list with ggplot objects for each variable of vec_variables.

  • For plot_type "biplot", the function returns a list with ggplot objects for each pairs of variables of vec_variables.

  • For plot_type "radar" and "raster, the function returns a list with ggplot objects with all variables of vec_variables.

  • For plot_type "map", it returns a map with location if vec_variables = NULL and labels_on = "location". If vec_variables is not NULL, it displays pie on map.

Each list is divided in several lists according to values of nb_parameters_per_plot_x_axis and nb_parameters_per_plot_in_col except for plot_type = "map".

Details

See the book for more details : https://priviere.github.io/PPBstats_book/napping.html#describe-the-data-3

See also

format_data_PPBstats