Plot network object from format_data_PPBstats()

Source: R/plot.data_network.R

plot.data_network returns ggplot to visualize outputs from format_data_PPBstats()

# S3 method for data_network
plot(x, data_to_pie = NULL, variable = NULL,
  pie_size = 0.2, plot_type = "network", in_col = "location",
  labels_on = FALSE, labels_size = 4, organize_sl = FALSE,
  x_axis = "germplasm", nb_parameters_per_plot_x_axis = 5,
  nb_parameters_per_plot_in_col = 5, vec_variables = NULL, zoom = 6,
  ...)

Arguments

x

output from format_data_PPBstats.data_network
data_to_pie

output from format_data_PPBstats with data_type = "data_agro"
variable

when data_to_pie is not NULL, variable to plot in a pie
pie_size

when data_to_pie is not NULL, size of the pie
plot_type

"network", "barplot" or "map"
in_col

factor in color that fill the barplot or the vertex of the network. It can be germplasm, location or year
labels_on

for plot_type = "network", labels to display on network for each vertex or location for map
labels_size

for plot_type = "network", size of the labels
organize_sl

for plot_type = "network", if TRUE, organize the network for unipart seed lots format with year in the chronological order on the x axis, location separated on the y axis
x_axis

for plot_type = "barplot" and unipart seed lots network, factor on the x axis It can be germplasm, location or year
nb_parameters_per_plot_x_axis

for plot_type = "barplot" and unipart seed lots network, number of parameter on the x_axis
nb_parameters_per_plot_in_col

for plot_type = "barplot" and unipart seed lots network, number of paramter by color that fill
vec_variables

for plot_type = "barplot" and unipart seed lots network, name of a relation type to display
zoom

zoom of the map, see ?get_map for more details
...

further arguments passed to or from other methods

Value

A list with ggplot object. For plot_type = "network", a list with as many elements as net with the network representation in ggplot format For plot_type = "barplot" and bipart network, it represents the number of edges per vertex for each germplasm and each location. For plot_type = "barplot" and unipart network on seed lots, it represents the number of edges per vertex for each germplasm and each location.

Details

For network diffusion are represented by a curve. For organize_sl, The representation is possible if the seed_lots are under the following format : GERMPLASM_LOCATION_YEAR_DIGIT.

The seed_lot column from data_to_pie must refer to the seed_lot of the network. The results is a list of two elements for each variable:

  • nb_received: number of seed lots that end the relation

  • nb_given: number of seed lots that start the relation

S3 method. See the book for more details : https://priviere.github.io/PPBstats_book/describe-data-network.html

See also

format_data_PPBstats