Get ggplot to visualize output from biplot_data.check_model_GxE

plot.biplot_GxE returns ggplot to visualize outputs from biplot_data.check_model_GxE

# S3 method for biplot_GxE
plot(x, ...)

Arguments

x	Output from biplot_data.check_model_GxE
...	further arguments passed to or from other methods

Value

It returns a list with 3 elements:

• ecovalence

• interaction which display the interaction matrix

• biplot, a list of four elements :

  • simple_biplot : the biplot of location and germplasm

  • which_won_where : plot to assess which germplasm win in which location (see ggplot_which_won_where for more information). Done only if gxe_analysis is GGE in model_GxE.

  • mean_vs_stability : a list of two elements (see ggplot_mean_vs_stability for more information). Done only if gxe_analysis is GGE in model_GxE.

    • mean : assess mean of each germplasm (see Details for more information).

    • stability : assess stability of each germplasm (see Details for more information).

  • discrimitiveness_vs_representativeness (see ggplot_discrimitiveness_vs_representativeness for more information) : a list of two elements. Done only if gxe_analysis is GGE in model_GxE.

    • discrimitiveness : assess discrimitiveness of each location (see Details for more information).

    • representativeness : assess representativeness of each location (see Details for more information).

  • discrimitiveness_vs_representativeness :represents discrimitiveness versus representativeness (see Details for more information).

Details

S3 method. The plot are done with the factoextra package

See also

• biplot_data